Kinetics of Explicit, Closed-form Solutions to Enzyme Progress Curves
Ref.: S. Schnell and C. Mendoza, Journal of Theoretical Biology, 187 (2): 207-212 (1997).
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EZ-Fit-IMM performs nonlinear regression curve-fitting of data to integrated Michaelis-Menten progress curve enzyme models selected from in internal library of 4 models. EZ-Fit-IMM is priced to make it affordable to professionals and students alike. But don't let the low price mislead you. EZ-Fit-IMM is robust and powerful using Quadratic Programming and Nelder-Mead Simplex nonlinear regression methods. Why pay hundreds and yearly license fees when you can have curve-fitting software for a fraction of the cost. Best of all, there are no time limit restrictions or number of uses.
With just a couple of clicks of the mouse, EZ-Fit-IMM simplifies curve fitting your data to four mathematical models. Select one or two equations from an internal library of 4 models, and EZ-Fit-IMM does the rest by fitting the curve to your data set, displaying the statistical results, model parameters, the best fit curve, and the residuals.
The EZ-Fit-IMM results of your curve-fit includes the fitted parameters, their standard errors , confidence limits, correlation matrix, gradients, and Akaike value.
Explicit, Closed-form Solutions to Enzyme Progress Curves
EZ-Fit-IMM is a software program for estimating kinetic parameters from progress curve data analysis of enzyme catalyzed reactions that reduce to forms analogous to the Michaelis–Menten equation. The method uses the Lambert Omega W function to obtain explicit, closed-form solutions to progress curves of substrate depletion or product accumulation (Schnell and Mendoza, 1997). The explicit nature of this approach simplifies nonlinear estimation of the kinetic parameters since basic algebraic expressions are used. The applicability of this approach for estimating Vmax and Km using the integrated Michaelis–Menten equation was verified using experimental progress curve data of substrate depletion or product accumulation determinations over time rather than initial velocity–substrate concentration data pairs to estimate Vmax and Km. Using the Km and Vmax values, it then calculates the maximum curvature and suggests a relevant range of points from the progress curve on both sides of the point of inflection. For the method used in EZ-Fit-IMM, the recommendation initial substrate concentration [So] should be in the range of Km/2 to 2Km.
1- Analysis of progress curves for enzyme-catalyzed reactions: application to unstable enzymes, coupled reactions and transient-state kinetics, Biochim. Biophys. Acta, 1205 (2): 268-274 (1994), R.G. Duggleby
2- Analysis of enzyme progress curves by non-linear regression Methods in Enzymology, 249: 61-90 (1995), R.G. Duggleby
3- Closed form solution for time-dependent enzyme kinetics Journal of Theoretical Biology, 187 (2): 207-212 (1997) S. Schnell and C. Mendoza
4- A Century of Enzyme Kinetics: Reliability of the Km and Vmax Estimates. Comments on Theoretical Biology, 8: 169–187 (2003), S. Schnell and P.K. Maini
5- Progress curve analysis for enzyme and microbial kinetic reactions using explicit solutions based on the Lambert W function, Journal of Microbiological Methods, 59 (3): 317-326 (2004), C.T. Goudar, S.K. Harris, M.J. McInervey, and J.M. Sulflita
6- Exact and Approximate Solutions for the Decades-old Michaelis-Menten Equation: Progress-curve Analysis Through Integrated Rate Equations, Biochemistry and Molecular Biology, 39 (2): 117–125 (2011), Marko Golicnik
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EZ-Fit-IMM for MS Windows
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Download the software zip file to a single folder, Unzip it and then run EZ-Fit-IMM.exe to obtain the registration code to unlock the software on your computer. Then purchase EZ-Fit-IMM using PayPal and email the registration code to us at DrFrank88@gmail.com No Windows installation is required; just drop it into a folder and run. The zip file also contains example data files.
Note: The generated EZ-Fit-IMM.lic file must reside in the same folder as EZ-Fit-IMM.exe. A text editor (e.g., Notepad) must be used to create and save all data files. A Notepad is available in the File/Edit Data File menu to revise and edit data.dat files once the data file is Opened.
Download and unZip the file in a folder (e.g., C:\MyEZ-Fit-IMM\) on a computer you choose to license the software, and then run EZ-Fit-IMM.exe to retrieve the "Registration Code". The lack of formal Windows installation is intentional, as it allows installation without administrative privileges (no dynamic link libraries (DLL) are used) and no network connection. After you've paid for the software using PayPal, email us the Registration Code at firstname.lastname@example.org and we'll send you the Activation Code to enter and fully activate the software. Once activated, do not delete or modify the lic file contained therein as it is required to execute and run the software. We suggest that you make backup copies of both the EZ-Fit-IMM.exe and EZ-Fit-IMM.lic files for future reference. EZ-Fit-IMM is copy-protected to run on one MS Windows 32 or 64-bit computer.
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Note: If your browser flags the downloaded zip file with a cautionary warning, you have the option of selecting "keep" to continue the download process. The EZ-Fit-IMM.zip file was scanned with Microsoft Windows Defender and shown not to have any detectable threats. The EZ-Fit-IMM software does not send any information back to us or anyone else, and it does not require a network connection to run. It is a standalone executable file (no DLL files) .
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